Computational Study of Some Urolithin Derivatives-based Biomass Corrosion Inhibitors on the Fe (110), Cu(111) and Al(111) Surface

Keywords: Urolithins, functional theory, Fukui function, Global reactivity, Monte Carlo simulations

Abstract

Corrosion poses a significant economic and environmental burden, highlighting the need for sustainable corrosion inhibitors. This study investigates the potential of urolithin derivatives (UroE, UroM5, UroM6, and UroM7) as eco-friendly corrosion inhibitors for Fe(110), Cu(111), and Al(111) surfaces. The research uses Density Functional Theory (DFT) calculations and Monte Carlo (MC) simulations to compute quantum chemical parameters, Fukui function, and noncovalent interactions. The results show that compounds with strong hydrogen bonding interactions form more robust bonds with the metal surface, potentially leading to enhanced corrosion protection. UroM5 demonstrates superior stability and lower reactivity due to its high band gap energy. MC simulations reveal that the adsorption energies of urolithin derivatives on metal surfaces follow a trend: UroM5 > UroM6 > UroE > UroM7, suggesting a stronger binding affinity for these metals. Thermal characteristics, particularly Gibbs free energy, were also investigated. The results suggest that a temperature increase from 825 to 1000 K may induce a transition from physisorption to chemisorption for all chemicals on the metal surface. These comprehensive analyses provide valuable insights into the mechanism and efficiency of urolithin derivatives as corrosion inhibitors, paving the way for the development of novel and eco-friendly anti-corrosion materials.

Downloads

Download data is not yet available.

Author Biography

Rebaz A. Omer, Department of Chemistry, Faculty of Science and Health, Koya University, Koya, Kurdistan Region – F.R. Iraq

Rebaz A. Omer is an Assistant Prof. at the Department of Chemistry, Faculty of Science and Health, Koya University. He got the B.Sc. degree in Chemistry, the M.Sc. degree in Organic Polymers, and the Ph.D. degree in Organic and Computational Chemistry. His research interests are in drug synthesis and computational chemistry.

References

Abbaz, T., Bendjeddou, A., and Villemin, D., 2018. Molecular structure, NBO analysis, first-hyperpolarizability, and homo-lumo studies of π-extended tetrathiafulvalene (EXTTF) derivatives connected to π-nitro phenyl by density functional method. International Journal of Advanced Chemistry, 6, p.114-120.

Ahmed, L., and Rebaz, O., 2020. Population analysis and UV-Vis spectra of dopamine molecule using gaussian 09. Journal of Physical Chemistry and Functional Materials, 3, pp.48-58.

Ahmed, L., and Rebaz, O., 2021. 1H-pyrrole, furan, and thiophene molecule corrosion inhibitor behaviors. Journal of Physical Chemistry and Functional Materials, 4, pp.1-4.

Akman, F., Demirpolat, A., Kazachenko, A.S., Kazachenko, A.S., Issaoui, N., and Al-Dossary, O.J.M., 2023. Molecular Structure, Electronic Properties, Reactivity (ELF, LOL, and Fukui), and NCI-RDG Studies of the Binary Mixture of Water and Essential Oil of Phlomis bruguieri. Molecules, 28, p.2684

Arulaabaranam, K., Muthu, S., Mani, G., and Geoffrey, A.B., 2021. Speculative assessment, molecular composition, PDOS, topology exploration (ELF, LOL, RDG), ligand-protein interactions, on 5-bromo-3-nitropyridine-2-carbonitrile. Heliyon, 7, p.e07061.

Asath, R.M., Rekha, T., Premkumar, S., Mathavan, T., and Benial, A.M.F., 2016. Vibrational, spectroscopic, molecular docking and density functional theory studies on N-(5-aminopyridin-2-yl) acetamide. Journal of Molecular Structure, 1125, pp.633-642.

Asif, M., Sajid, H., Ayub, K., Gilani, M.A., Anwar, N., and Mahmood, T., 2023. Therapeutic potential of oxo-triarylmethyl (oxTAM) as a targeted drug delivery system for nitrosourea and fluorouracil anticancer drugs; A first principles insight. Journal of Molecular Graphics and Modelling, 122, p.108469.

Bader, R.F., 2010. Definition of molecular structure: By choice or by appeal to observation? The Journal of Physical Chemistry A, 114, pp.7431-7444.

Becke, A.D., 1996. Density-Functional Thermochemistry. Book of Abstracts, 212th ACS National Meeting, Orlando, FL. Boughoues, Y., Benamira, M., Messaadia, L., and Ribouh, N., 2020. Adsorption and corrosion inhibition performance of some environmental friendly organic inhibitors for mild steel in HCl solution via experimental and theoretical study. Colloids and Surfaces A: Physicochemical and Engineering Aspects, 593, p.124610.

Boukabcha, N., Benmohammed, A., Belhachemi, M.H.M., Goudjil, M., Yahiaoui, S., Megrouss, Y., Djafri, A., Khelloul, N., Benyehlou, Z.D., and Djafri, A., 2023. Spectral investigation, TD-DFT study, hirshfeld surface analysis, NCI-RDG, HOMO-LUMO, chemical reactivity and NLO properties of 1-(4-fluorobenzyl)- 5-bromolindolin-2, 3dione. Journal of Molecular Structure, 1285, p.135492.

Bulut, N., Kaygili, O., Hssain, A.H., Dorozhkin, S.V., Abdelghani, B., Orek, C., Kebiroglu, H., Ates, T., and Kareem, R.O., 2023. Mg-Dopant effects on band structures of Zn-based hydroxyapatites: A theoretical study. Iranian Journal of Science, 47, pp.1-17.

Caid, Z.A.E., Left, D.B., Thoume, A., Kellal, R., and Zertoubi, M., 2023. A comprehensive computational study of N-phenylacetamide derivatives as corrosion inhibitors for copper: Insights from DFT and Molecular Dynamics. Journal of Bio-and Tribo-Corrosion, 9, p.83.

Chen, C., Jiang, L., Guo, M.Z., Xu, P., Chen, L., and Zha, J., 2019. Effect of sulfate ions on corrosion of reinforced steel treated by DNA corrosion inhibitor in simulated concrete pore solution. Construction and Building Materials, 228, p.116752.

Dennington, R., Keith, T.A., and Millam, J.M., 2016. GaussView, Version 6.0. 16. Semichem Inc., Shawnee Mission KS. Domingo, L.R., Aurell, M.J., Pérez, P., and Contreras, R., 2002. Quantitative characterization of the global electrophilicity power of common diene/dienophile pairs in Diels-Alder reactions. Tetrahedron, 58, pp.4417-4423.

Ech-Chihbi, E., El Hajjaji, F., Titi, A., Messali, M., Kaya, S., Serdaroğlu, G., Hammouti, B., and Taleb, M., 2024. Towards understanding the corrosion inhibition mechanism of green imidazolium-based ionic liquids for mild steel protection in acidic environments. Indonesian Journal of Science and Technology, 9, pp.395-420.

El Aoufir, Y., El Bakri, Y., Lgaz, H., Zarrouk, A., Salghi, R., Warad, I., Ramli, Y., Guenbour, A., Essassi, E., and Oudda, H., 2017. Understanding the adsorption of benzimidazole derivative as corrosion inhibitor for carbon steel in 1 M HCl: Experimental and theoretical studies. Journal of Materials and Environmental Science, 8, pp.3290-3302.

Fan, B., Zhao, X., Liu, Z., Xiang, Y., and Zheng, X., 2022. Inter-component synergetic corrosion inhibition mechanism of Passiflora edulia Sims shell extract for mild steel in pickling solution: Experimental, DFT and reactive dynamics investigations. Sustainable Chemistry and Pharmacy, 29, p.100821.

Fayomi, O.M., Chahul, H.F., Ike, D.C., Ndukwe, G.I., and Phoebe, I.M., 2021. Thermodynamic and adsorption study of the corrosion inhibition of mild steel by aframomum chrysanthum extract in 0.1 M hydrochloric acid solution. Asian Journal of Applied Chemistry Research, 8, pp.64-73.

Frisch, M., Clemente, F.M.J., Frisch, G.W., Trucks, H.B., Schlegel, G.E., Scuseria, M.A., Robb, J.R., Cheeseman, G., Scalmani, V., Barone, B., Mennucci, G.A., Petersson, H., Nakatsuji, M., Caricato, X., Li, H.P., Hratchian,A.F., Izmaylov,J., Bloino, G., Zheng, J.L., Sonnenberg, M., Hada, M., Ehara, K., Toyota, R., Fukuda, J., Hasegawa, M., Ishida, T., Nakajima, Y., Honda, O., Kitao, H., Nakai, T., Vreven, J.A., Montgomery, J.E. Jr., Peralta, F., Ogliaro, M., Bearpark, J.J., Heyd, E., Brothers, K.N., Kudin, V.N., Staroverov, T., Keith, R., Kobayashi, J., Normand, K., Raghavachari, A., Rendell, J.C., Burant, S.S., Iyengar, J., Tomasi, M., Cossi, N., Rega, J.M., Millam, M., Klene, J.E., Knox, J.B., Cross, V., Bakken, C., Adamo, J., Jaramillo, R., Gomperts,R.E., Stratmann, O., Yazyev, A.J., Austin, R., Cammi, C., Pomelli,J.W., Ochterski, R.L., Martin, K., Morokuma, V.G., Zakrzewski, G.A., Voth, P., Salvador, J.J., Dannenberg, S., Dapprich, A.D., Daniels, O., Farkas, J.B., Foresman, J.V., Ortiz, J., Cioslowski, D.J., 2013. Fox, Gaussian 09, Revision D.01. Gaussian Inc., Wallingford. Frisch, M.J., Pople, J.A., and Binkley, J.S., 1984. Self‐consistent molecular orbital methods 25. Supplementary functions for Gaussian basis sets. The Journal of Chemical Physics, 80, pp.3265-3269.

Gowers, R.J., Farmahini, A.H., Friedrich, D., and Sarkisov, L., 2018. Automated analysis and benchmarking of GCMC simulation programs in application to gas adsorption. Molecular Simulation, 44, pp.309-321.

Guruprasad, A., Sachin, H., Swetha, G., and Prasanna, B., 2020. Corrosion inhibition of zinc in 0.1 M hydrochloric acid medium with clotrimazole: Experimental, theoretical and quantum studies. Surfaces and Interfaces, 19, pp.100478

Hamad, A.R., Ahmed, K.M., Omer, R.A., Azeez, Y.H., Kareem, R.O., Othman, K.A., and Amin, A.A., 2025. Synthesis, characterization and computational study of thiourea-based dihydropyrimidine derivatives: A focus on adsorption and reactivity. Journal of Molecular Structure, 1325, p.140950.

Hamad, O., Kareem, R.O., and Kaygili, O., 2023. Density function theory study of the physicochemical characteristics of 2-nitrophenol. Journal of Physical Chemistry and Functional Materials, 6, pp.70-76.

Hameed, R.A., Abu-Nawwas, A.A.H., and Shehata, H., 2013. Nano-composite as corrosion inhibitors for steel alloys in different corrosive media. Advances in Applied Science Research, 4, pp.126-129.

Hazani, N.N., Mohd, Y., Ghazali, S.A.I.S.M., Farina, Y., and Dzulkifli, N.N., 2019. Electrochemical studies on corrosion inhibition behaviour of synthesised 2-acetylpyridine 4-ethyl-3-thiosemicarbazone and its Tin (IV) complex for mild steel in 1 M HCl solution. Journal of Electrochemical Science and Technology, 10, pp.29-36.

Hekim, S., Azeez, Y.H., and Akpinar, S., 2019. The theoretical investigation of the HOMO, LUMO energies and chemical reactivity of C9H12 and C7F3NH5Cl molecules. Journal of Physical Chemistry and Functional Materials, 2, pp.29-31.

Hssain, A., 2022. DFT modelling studies of spectroscopic properties and medium effects on molecular reactivity of secnidazole in different solvents. Journal of Physical Chemistry and Functional Materials, 5, pp.69-83.

Humphrey, W., Dalke, A., and Schulten, K., 1996. VMD: Visual molecular dynamics. Journal of Molecular Graphics, 14, pp.33-38, 27-28.

İsen, F., Kaygili, O., Bulut, N., Ates, T., Osmanlıoğlu, F., Keser, S., Tatar, B., Özcan, I., Ates, B., and Ercan, F., 2023. Experimental and theoretical characterization of Dy-doped hydroxyapatites. Journal of The Australian Ceramic Society, 59, pp.849-864.

Jumabaev, A., Holikulov, U., Hushvaktov, H., Issaoui, N., and Absanov, A., 2023. Intermolecular interactions in ethanol solution of OABA: Raman, FTIR, DFT, M062X, MEP, NBO, FMO, AIM, NCI, RDG analysis. Journal of Molecular Liquids, 377, p.121552.

Kareem, R.O., Kaygili, O., Ates, T., Bulut, N., Koytepe, S., Kuruçay, A., Ercan, F., and Ercan, I., 2022. Experimental and theoretical characterization of Bi-based hydroxyapatites doped with Ce. Ceramics International, 48, pp.33440-33454.

Kareem, R.O., Omer, R.A., Ahmed, K.M., and Azeez, Y.H., 2024. DFT and Monte Carlo simulation studies of potential corrosion inhibition properties of some basic heterocyclic compounds. Molecular Simulation, 50, pp.1447-1464.

Koparir, P., Omar, R.A., Sarac, K., Ahmed, L.O., Karatepe, A., Taskin-Tok, T., and Safin, D.A., 2023. Synthesis, characterization and computational analysis of thiophene-2, 5-diylbis ((3-mesityl-3-methylcyclobutyl) methanone. Polycyclic Aromatic Compounds, 43, pp.6107-6125.

Korkmaz, A.A., Ahmed, L.O., Kareem, R.O., Kebiroglu, H., Ates, T., Bulut, N., Kaygili, O., and Ates, B., 2022. Theoretical and experimental characterization of Sn-based hydroxyapatites doped with Bi. Journal of the Australian Ceramic Society, 58, pp.803-815.

Kosrat, K., Rebaz, O., Taher, S., and Hamad, W.M.H., 2023. Dissociation constant studies of 2-substituted 4-formylbenzoic acid based on conductometric parameters using fuoss-hsia theories. International Journal of Thermodynamics, 26, pp.1-10.

Krishnan, R., Binkley, J.S., Seeger, R., and Pople, J.A., 1980. Self‐consistent molecular orbital methods. XX. A basis set for correlated wave functions. The Journal of Chemical Physics, 72, pp.650-654.

Lu, T., and Chen, F., 2012. Multiwfn: Amultifunctional wavefunction analyzer. Journal of Computational Chemistry, 33, pp.580-592.

Mamad, D.M., Omer, R.A., and Othman, K.A., 2023a. Quantum chemical analysis of amino acids as anti-corrosion agents. Corrosion Reviews, 41, pp.703-717.

Mamad, D.M., Rasul, H.H., Awla, A.H., and Omer, R.A., 2023b. Insight into corrosion inhibition efficiency of imidazole-based molecules: A quantum chemical study. Doklady Physical Chemistry, 511, pp.125-133.

Mamand, D.M., Azeez, Y.H., and Qadr, H.M., 2023. Monte carlo and DFT calculations on the corrosion inhibition efficiency of some benzimide molecules. Mongolian Journal of Chemistry, 24, pp.1-10.

Merdas, S.M., 2021. Synthesis, characterization and DFT studies of new AzoSchiff base and evaluation as corrosion inhibitor. Annals of the Romanian Society for Cell Biology, 25, pp.910-928.

Metropolis, N., Rosenbluth, A.W., Rosenbluth, M.N., Teller, A.H., and Teller, E., 1953. Equation of state calculations by fast computing machines. The Journal of Chemical Physics, 21, pp.1087-1092.

Murthy, Z.V.P., and Vijayaragavan, K., 2014. Mild steel corrosion inhibition by acid extract of leaves of Hibiscus sabdariffa as a green corrosion inhibitor and sorption behavior. Green Chemistry Letters and Reviews, 7, pp.209-219.

Mustafa, M.D., and Mohammad, Q.H., 2023. Quantum chemical and monte carlo simulations on corrosion inhibition efficiency of 2-mercapto-5-phenylfuran and bis (pyridyl) oxadiazoles. Izvestiya Vysshikh Uchebnykh Zavedeniy Khimiya Khimicheskaya Tekhnologiya, 66, pp.33-45.

Nam, K., Gao, J., and York, D.M., 2005. An efficient linear-scaling Ewald method for long-range electrostatic interactions in combined QM/MM calculations. Journal of Chemical Theory and Computation, 1, pp.2-13.

Norouzbahari, M., Burgaz, E.V., Ercetin, T., Fallah, A., Foroumadi, A., Firoozpour, L., Sahin, M.F., Gazi, M., and Gulcan, H.O., 2018. Design, synthesis and characterization of novel urolithin derivatives as cholinesterase inhibitor agents. Letters in Drug Design and Discovery, 15, pp.1131-1140.

Omer, R., Koparir, P., Koparir, M., Rashid, R., Ahmed, L., and Hama, J., 2022. Synthesis, characterization and dft study of 1-(3-mesityl-3-methylcyclobutyl)- 2-((4-phenyl-5-(thiophen-2-yl)-4h-1, 2, 4-triazol-3-yl) thio) ethan-1-one. Protection of Metals and Physical Chemistry of Surfaces, 58, pp.1077-1089.

Omer, R.A., Ahmed, K.M., Kamal, S., Omer, K.A., Hamad, W.M., and Mamad, D.M., 2023a. N, N-Bis (2, 4-dihydroxy benzaldehyde) benzidine: Synthesis, characterization, DFT, and theoretical corrosion study. Journal of Molecular Structure, 1300, p.137279.

Omer, R.A., Ahmed, K.M., Othman, K.A., Hamad, W.M., Faraj, R.K., Muhialdin, A.J., and Salih, S.K., 2024. New thiazole derivatives. Aro-The Scientific Journal of Koya University, 12, pp.10-22.

Omer, R.A., Koparir, P., and Koparir, M., 2023b. Synthesis, experimental characterization, DFT and theoretical anticorrosion study for 1-(4-(3-Methyl3-phenylcyclobutyl) thiazol-2-yl)-3-(p-tolyl) thiourea. Protection of Metals and Physical Chemistry of Surfaces, 59, p.1315.

Özbakır Işin, D., Karakuş, N., Lgaz, H., Kaya, S., and Chung, I., 2020. Theoretical insights about inhibition efficiencies of some 8-Hydroxyqionoline derivatives against the corrosion of mild steel. Molecular Simulation, 46, pp.1398-1404.

Predko, P., Rajnovic, D., Grilli, M.L., Postolnyi, B.O., Zemcenkovs, V., Rijkuris, G., Pole, E., and Lisnanskis, M., 2021. Promising methods for corrosion protection of magnesium alloys in the case of Mg-Al, Mg-Mn-Ce and Mg-Zn-Zr: A recent progress review. Metals, 11, p.1133.

Qader, İ.N., Mohammad, A., Azeez, Y.H., Agid, R.S., Hassan, H.S., and Al-Nabawi, S.H.M., (2019). Chemical structural and vibrational analysis of potassium acetate: Adensity function theory study. Journal of PhysicalChemistry and Functional Materials, 2, pp.23-25.

Qadr, H.M., and Mamand, D.M., 2023. A computational study of substituent effect 1, 3, 4-thiadiazole on corrosion inhibition. Azerbaijan Chemical Journal, pp.19-29.

Rani, B., and Basu, B.B.J., 2012. Green inhibitors for corrosion protection of metals and alloys: An overview. International Journal of Corrosion, 2012, p.380217.

Rasul, H.H., Mamad, D.M., Azeez, Y.H., Omer, R.A., and Omer, K.A., 2023. Theoretical investigation on corrosion inhibition efficiency of some amino acid compounds. Computational and Theoretical Chemistry, 1225, p.114177.

Razali, N.Z.K., Wan Hassan, W.N.S., Sheikh Mohd Ghazali, S.A.I., Mohd Shotor, S.N., and Dzulkifli, N.N., 2023. DFT, Fukui indices, and molecular dynamic simulation studies on corrosion inhibition characteristics: A review. Chemical Papers, 78, pp.1-17.

Rebaz, O., Ahmed, L., Jwameer, H., and Koparir, P., 2022a. Structural analysis of epinephrine by combination of density functional theory and hartree-fock methods. El-Cezeri, 9, pp.760-776.

Rebaz, O., Koparir, P., Qader, I., and Ahmed, L.J., 2022b. Theoretical determination of corrosion inhibitor activities of naphthalene and tetralin. Gazi University Journal of Science, 35, pp.434-444.

Rozas, I., Alkorta, I., and Elguero, J., 2000. Behavior of ylides containing N, O, and C atoms as hydrogen bond acceptors. Journal of the American Chemical Society, 122, pp.11154-11161.

Saidj, M., Djafri, A., Rahmani, R., Belkafouf, N.E.H., Boukabcha, N., Djafri,A., and Chouaih, A., 2023. Molecular structure, experimental and theoretical vibrational spectroscopy,(HOMO-LUMO, NBO) investigation,(RDG, AIM) analysis,(MEP, NLO) study and molecular docking of Ethyl-2-{[4-Ethyl-5- (Quinolin-8-yloxyMethyl)-4H-1, 2, 4-Triazol-3-yl] sulfanyl} acetate. Polycyclic Aromatic Compounds, 43, pp.2152-2176.

Salih, S.K., Mustafa, R.M., Mamad, D.M., Kaka, K.N., Omer, R.A., and Hamad, W.M., 2023. Synthesis of liquid crystalline benzothiazole based derivatives: Theoretical and experimental study of their optical and electrical properties. ZANCO Journal of Pure and Applied Sciences, 35, pp.143-162.

Srivastavaa, A., Kumara, V., Vermaa, A., Guptaa, M., and Dubeya, Y., 2019. Kinetic, Mechanistic and quantum chemical calculations of Ru (III) catalysed redox reaction of aspirin by nbs in acidic medium. Journal of Information and Computational Science, 9, pp.516-540.

Sujatha, H., and Lavanya, M., 2023. An insight to HOMO LUMO aspects in corrosion applications. Canadian Metallurgical Quarterly, 62, pp.761-772.

Sun, H., 1998. COMPASS: An ab initio force-field optimized for condensedphase applications overview with details on alkane and benzene compounds. The Journal of Physical Chemistry B, 102, pp.7338-7364.

Sun, H., Jin, Z., Yang, C., Akkermans, R.L., Robertson, S.H., Spenley, N.A., Miller, S., and Todd, S.M., 2016. COMPASS II: Extended coverage for polymer and drug-like molecule databases. Journal of Molecular Modeling, 22, pp.1-10.

Sun, H., Ren, P., and Fried, J., 1998. The compass force field: Parameterization and validation for phosphazenes. Computational and Theoretical Polymer Science, 8, pp.229-246.

Tang, L., and Zhu, W., 2021. Computational design of high energy RDX-based derivatives: Property prediction, intermolecular interactions, and decomposition mechanisms. Molecules, 26, p.7199.

Tasić, Ž.Z., Petrović Mihajlović, M.B., Radovanović, M.B., and Antonijević, M.M., 2019. New trends in corrosion protection of copper. Chemical Papers, 73, pp.2103-2132.

Uwiringiyimana, E., Joseph, I.V., and ADams, F.V., 2016. The effect of corrosion inhibitors on stainless steels and aluminium alloys: A review. African Journal of Pure and Applied Chemistry, 10, pp.23-32.

Xiangrong, X., Zhuanhong, L., and Lei, Y., 2023. The synthesis of urolithins and their derivatives and the modes of antitumor action. Mini-Reviews in Medicinal Chemistry, 23, pp.80-87.

Yıldız, C.A., Güney, E., Nasif, V., Karakaş, D., and Erkan, S., 2023. Investigation of substituent effect on rhenium complexes by DFT methods: Structural analysis, IR spectrum, quantum chemical parameter, NLO and OLED properties, molecular docking. Journal of Molecular Structure, 1278, p.134835.

Yousif, H.A, and Hanaa, S.H., 2021b. Theoretical study for chemical reactivity descriptors of tetrathiafulvalene in gas phase and gas phase and solvent phases based on density functional theory. Passer Journal of Basic and Applied Sciences, 3, pp.167-173.

Yousif, H.A., and Hanaa, S.H., 2021a. Theoretical study for chemical reactivity descriptors of tetrathiafulvalene in gas phase and gas phase and solvent phases based on density functional theory. Passer Journal of Basic and Applied Sciences, 3, pp.167-173.

Published
2025-02-06
How to Cite
Omer, R. A. (2025) “Computational Study of Some Urolithin Derivatives-based Biomass Corrosion Inhibitors on the Fe (110), Cu(111) and Al(111) Surface”, ARO-THE SCIENTIFIC JOURNAL OF KOYA UNIVERSITY, 13(1), pp. 49-64. doi: 10.14500/aro.11828.